nf-core_modules/modules/bbmap/index/meta.yml

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2021-09-03 07:28:28 +00:00
name: bbmap_index
description: This module calls bbmap.sh to create an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
keywords:
- mapping
- index
- fasta
tools:
- bbmap:
description: BBMap is a short read aligner, as well as various other bioinformatic tools.
homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
tool_dev_url: None
doi: ""
licence: ['UC-LBL license (see package)']
input:
- fasta:
type: fasta
description: fasta formatted file with nucleotide sequences
pattern: "*.{fna,fa,fasta}"
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- db:
type: directory
description: Directory with index files
pattern: "ref"
authors:
- "@daniellundin"