nf-core_modules/tests/modules/fasttree/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { FASTTREE } from '../../../modules/fasttree/main.nf' addParams( options: [:] )

workflow test_fasttree {
    
    input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]

    FASTTREE ( input )
}
adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum 2021-04-08 17:15:23 +00:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`include { FASTTREE } from '../../../modules/fasttree/main.nf' addParams( options: [:] )`
adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum 2021-04-08 17:15:23 +00:00
			`workflow test_fasttree {`

			`input = [ file(params.test_data['sarscov2']['genome']['informative_sites_fas'], checkIfExists: true) ]`

			`FASTTREE ( input )`
			`}`