nf-core_modules/tests/modules/pycoqc/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PYCOQC } from '../../../modules/pycoqc/main.nf' addParams ( options: ['args' : '--min_pass_qual 0'] )

workflow test_pycoqc {

    input = [ file(params.test_data['sarscov2']['nanopore']['test_sequencing_summary'], checkIfExists: true) ]

    PYCOQC ( input )
}
Add pycoqc module (#424) * Add pycoqc module * Adding pycoqc module tests * Update pycoqc wilth new functions.nf * Update tests to check for json report content 2021-04-12 09:52:14 +00:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`include { PYCOQC } from '../../../modules/pycoqc/main.nf' addParams ( options: ['args' : '--min_pass_qual 0'] )`
Add pycoqc module (#424) * Add pycoqc module * Adding pycoqc module tests * Update pycoqc wilth new functions.nf * Update tests to check for json report content 2021-04-12 09:52:14 +00:00
			`workflow test_pycoqc {`

			`input = [ file(params.test_data['sarscov2']['nanopore']['test_sequencing_summary'], checkIfExists: true) ]`

			`PYCOQC ( input )`
			`}`