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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
12 lines
322 B
Text
12 lines
322 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PYCOQC } from '../../../modules/pycoqc/main.nf' addParams ( options: ['args' : '--min_pass_qual 0'] )
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workflow test_pycoqc {
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input = [ file(params.test_data['sarscov2']['nanopore']['test_sequencing_summary'], checkIfExists: true) ]
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PYCOQC ( input )
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}
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