nf-core_modules/tests/modules/untar/test.yml

- name: untar test_untar
  command: nextflow run ./tests/modules/untar -entry test_untar -c ./tests/config/nextflow.config  -c ./tests/modules/untar/nextflow.config
  tags:
    - untar
  files:
    - path: output/untar/kraken2/hash.k2d
      md5sum: 8b8598468f54a7087c203ad0190555d9
    - path: output/untar/kraken2/opts.k2d
      md5sum: a033d00cf6759407010b21700938f543
    - path: output/untar/kraken2/taxo.k2d
      md5sum: 094d5891cdccf2f1468088855c214b2c

- name: untar test_untar_different_output_path
  command: nextflow run ./tests/modules/untar -entry test_untar_different_output_path -c ./tests/config/nextflow.config  -c ./tests/modules/untar/nextflow.config
  tags:
    - untar
  files:
    - path: output/untar/flowcell/RunInfo.xml
      md5sum: 03038959f4dd181c86bc97ae71fe270a

- name: untar test_untar_onlyfiles
  command: nextflow run ./tests/modules/untar -entry test_untar_onlyfiles -c ./tests/config/nextflow.config  -c ./tests/modules/untar/nextflow.config
  tags:
    - untar
  files:
    - path: output/untar/hello/hello.txt
      md5sum: e59ff97941044f85df5297e1c302d260
fix untar output dir 2022-06-02 09:09:55 +00:00			`- name: untar test_untar`
			`command: nextflow run ./tests/modules/untar -entry test_untar -c ./tests/config/nextflow.config -c ./tests/modules/untar/nextflow.config`
Add untar module 2021-02-09 10:50:32 +00:00			`tags:`
			`- untar`
			`files:`
Fix some module tests after switching to config data (#386) * Adding tar.gz kraken2 db to test data * Update test path files for untar module * Update test path files for kraken2/run module * Update test path files for cat/fastq module 2021-03-24 18:28:07 +00:00			`- path: output/untar/kraken2/hash.k2d`
			`md5sum: 8b8598468f54a7087c203ad0190555d9`
			`- path: output/untar/kraken2/opts.k2d`
			`md5sum: a033d00cf6759407010b21700938f543`
			`- path: output/untar/kraken2/taxo.k2d`
			`md5sum: 094d5891cdccf2f1468088855c214b2c`
fix untar output dir 2022-06-02 09:09:55 +00:00
			`- name: untar test_untar_different_output_path`
			`command: nextflow run ./tests/modules/untar -entry test_untar_different_output_path -c ./tests/config/nextflow.config -c ./tests/modules/untar/nextflow.config`
			`tags:`
			`- untar`
			`files:`
Fix for nested directories in tar archive (#2062) * Fix for nested directories in tar archive * fix untar for tar with a single directory * prettier 2022-09-15 09:32:36 +00:00			`- path: output/untar/flowcell/RunInfo.xml`
fix untar output dir 2022-06-02 09:09:55 +00:00			`md5sum: 03038959f4dd181c86bc97ae71fe270a`
Update UNTAR to account for file-only or multi-directory tar archives (#2055) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Fix when only files or multiple directories * Add test for only-files tar * Fix bash check 2022-09-14 08:40:45 +00:00
			`- name: untar test_untar_onlyfiles`
			`command: nextflow run ./tests/modules/untar -entry test_untar_onlyfiles -c ./tests/config/nextflow.config -c ./tests/modules/untar/nextflow.config`
			`tags:`
			`- untar`
			`files:`
			`- path: output/untar/hello/hello.txt`
			`md5sum: e59ff97941044f85df5297e1c302d260`