mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 22:23:09 +00:00
68 lines
1.8 KiB
YAML
68 lines
1.8 KiB
YAML
|
name: "merquryfk_ploidyplot"
|
||
|
|
description: An improved version of Smudgeplot using FastK
|
||
|
|
keywords:
|
||
|
|
- kmer
|
||
|
|
- smudgeplot
|
||
|
|
- ploidy
|
||
|
|
tools:
|
||
|
|
- "merquryfk":
|
||
|
|
description: "FastK based version of Merqury"
|
||
|
|
homepage: "https://github.com/thegenemyers/MERQURY.FK"
|
||
|
|
documentation: ""
|
||
|
|
tool_dev_url: "https://github.com/thegenemyers/MERQURY.FK"
|
||
|
|
doi: ""
|
||
|
|
licence: "https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fastk_hist:
|
||
|
|
type: file
|
||
|
|
description: A histogram files from the program FastK
|
||
|
|
pattern: "*.hist"
|
||
|
|
- fastk_ktab:
|
||
|
|
type: file
|
||
|
|
description: ktab files from the program FastK
|
||
|
|
pattern: "*.ktab*"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- filled_ploidy_plot_png:
|
||
|
|
type: file
|
||
|
|
description: A filled ploidy plot in PNG format
|
||
|
|
pattern: "*.fi.png"
|
||
|
|
- filled_ploidy_plot_pdf:
|
||
|
|
type: file
|
||
|
|
description: A filled ploidy plot in PDF format
|
||
|
|
pattern: "*.fi.pdf"
|
||
|
|
- line_ploidy_plot_png:
|
||
|
|
type: file
|
||
|
|
description: A line ploidy plot in PNG format
|
||
|
|
pattern: "*.ln.png"
|
||
|
|
- line_ploidy_plot_pdf:
|
||
|
|
type: file
|
||
|
|
description: A lin4 ploidy plot in PDF format
|
||
|
|
pattern: "*.ln.pdf"
|
||
|
|
- stacked_ploidy_plot_png:
|
||
|
|
type: file
|
||
|
|
description: A stacked ploidy plot in PNG format
|
||
|
|
pattern: "*.st.png"
|
||
|
|
- stacked_ploidy_plot_pdf:
|
||
|
|
type: file
|
||
|
|
description: A stacked ploidy plot in PDF format
|
||
|
|
pattern: "*.st.pdf"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@mahesh-panchal"
|