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48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
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name: medaka
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description: A tool to create consensus sequences and variant calls from nanopore sequencing data
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keywords:
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- assembly
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- polishing
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- nanopore
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tools:
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- medaka:
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description: Neural network sequence error correction.
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homepage: https://nanoporetech.github.io/medaka/index.html
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documentation: https://nanoporetech.github.io/medaka/index.html
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tool_dev_url: https://github.com/nanoporetech/medaka
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doi: ""
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licence: ['Mozilla Public License 2.0']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input nanopore fasta/FastQ files
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pattern: "*.{fasta,fa,fastq,fastq.gz,fq,fq.gz}"
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- assembly:
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type: file
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description: Genome assembly
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pattern: "*.{fasta,fa}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- assembly:
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type: file
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description: Polished genome assembly
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pattern: "*.fa.gz"
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authors:
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- "@avantonder"
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