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nf-core_modules/tests/modules/motus/merge/test.yml

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Add MOTUS/MERGE (#1734) * Add motus/merge module, missing test yml * Fix prefix * Fix polymersase * Update test meta.yml * Try new version system * Typo fix * Clairfy docs for the version file * Switch to directory auto detection * Now with the change and not just meta * Remove now unneeded input parameter from test * Fix input type check * Try adding db requirement to fix docker issue * Update modules/motus/merge/main.nf * Fix input * Apply suggestions from code review * Fix md5sums * Replace debugging db location with actual * Fix contains due to further varialbility * Indenting
2022-07-07 07:47:41 +00:00
- name: motus merge test_motus_merge
command: nextflow run ./tests/modules/motus/merge -entry test_motus_merge -c ./tests/config/nextflow.config -c ./tests/modules/motus/merge/nextflow.config
tags:
- motus
- motus/merge
files:
Update MOTUS/MERGE (#2068) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Add meta to mOTUs merge * Put tests back to use downloaded db * Apply suggestions from code review * Fix test text string * md5sum -> contains * Update nextflow.config
2022-09-15 17:45:43 +00:00
- path: output/motus/test.txt
contains:
- "consensus_taxonomy"
- name: motus merge test_motus_merge_biom
command: nextflow run ./tests/modules/motus/merge -entry test_motus_merge_biom -c ./tests/config/nextflow.config -c ./tests/modules/motus/merge/nextflow.config
tags:
- motus
- motus/merge
files:
- path: output/motus/test.biom
contains:
- "Biological Observation Matrix 1.0.0"
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