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nf-core_modules/tests/modules/star/genomegenerate/test.yml

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Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
- name: star genomegenerate test_star_genomegenerate
command: nextflow run tests/modules/star/genomegenerate -entry test_star_genomegenerate -c tests/config/nextflow.config
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
tags:
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 04:10:52 -04:00
- star/genomegenerate
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
- star
Restructure tests to run individually for each module
2021-02-03 11:02:58 -05:00
files:
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/Genome
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: a654229fbca6071dcb6b01ce7df704da
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/Log.out
- path: output/star/star/SA
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 8c3edc46697b72c9e92440d4cf43506c
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/SAindex
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: d0fbf2789ee1e9f60c352ba3655d9de4
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/chrLength.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: c81f40f27e72606d7d07097c1d56a5b5
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/chrName.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 5ae68a67b70976ee95342a7451cb5af1
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/chrNameLength.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: b190587cae0531f3cf25552d8aa674db
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/chrStart.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 8d3291e6bcdbe9902fbd7c887494173f
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/exonGeTrInfo.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: d04497f69d6ef889efd4d34fe63edcc4
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/exonInfo.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 0d560290fab688b7268d88d5494bf9fe
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/geneInfo.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 8b608537307443ffaee4927d2b428805
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/genomeParameters.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 5a1ec027e575c3d7c1851e6b80fb8c5d
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/sjdbInfo.txt
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/sjdbList.fromGTF.out.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 8760c33e966dad0b39f440301ebbdee4
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/sjdbList.out.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules
2021-09-28 01:56:27 -04:00
- path: output/star/star/transcriptInfo.tab
Updated the version of STAR in align and genomegenerate modules (#604) * Updated the version of STAR in align and genomegenerate modules * Changes in test.yml * Changes in test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 08:30:52 -04:00
md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
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