2020-12-01 06:49:52 +00:00
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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2021-02-03 17:43:14 +00:00
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include { FASTQC } from '../../../software/fastqc/main.nf' addParams( options: [:] )
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include { MULTIQC } from '../../../software/multiqc/main.nf' addParams( options: [:] )
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2020-12-04 06:55:16 +00:00
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2020-12-01 06:49:52 +00:00
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workflow test_multiqc {
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2021-02-03 17:43:14 +00:00
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input = [ [ id: 'test', single_end: false ],
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2021-03-24 18:29:41 +00:00
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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2021-03-24 09:53:41 +00:00
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]
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2021-03-24 18:29:41 +00:00
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2021-02-03 17:43:14 +00:00
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FASTQC ( input )
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MULTIQC ( FASTQC.out.zip.collect { it[1] } )
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2020-12-01 06:49:52 +00:00
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}
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