mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
56 lines
1.9 KiB
YAML
56 lines
1.9 KiB
YAML
|
- name: shovill with spades
|
||
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- shovill
|
||
|
|
- shovill_spades
|
||
|
|
files:
|
||
|
|
- path: output/shovill/contigs.gfa
|
||
|
|
md5sum: 277af5d8ae8a0d2432db59a316226828
|
||
|
|
- path: output/shovill/spades.fasta
|
||
|
|
md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
|
||
|
|
# MD5sum not reproducible (timestamp)
|
||
|
|
- path: output/shovill/contigs.fa
|
||
|
|
- path: output/shovill/shovill.corrections
|
||
|
|
- path: output/shovill/shovill.log
|
||
|
|
|
||
|
|
- name: shovill with megahit
|
||
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- shovill
|
||
|
|
- shovill_megahit
|
||
|
|
files:
|
||
|
|
- path: output/shovill/shovill.corrections
|
||
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
||
|
|
# MD5sum not reproducible (timestamp, contig order)
|
||
|
|
- path: output/shovill/contigs.fa
|
||
|
|
- path: output/shovill/contigs.fastg
|
||
|
|
- path: output/shovill/megahit.fasta
|
||
|
|
- path: output/shovill/shovill.log
|
||
|
|
|
||
|
|
- name: shovill with skesa
|
||
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- shovill
|
||
|
|
- shovill_skesa
|
||
|
|
files:
|
||
|
|
- path: output/shovill/shovill.corrections
|
||
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
||
|
|
- path: output/shovill/skesa.fasta
|
||
|
|
md5sum: c0c2d11b633310eb1437345cb599c33c
|
||
|
|
# MD5sum not reproducible (timestamp)
|
||
|
|
- path: output/shovill/contigs.fa
|
||
|
|
- path: output/shovill/shovill.log
|
||
|
|
|
||
|
|
- name: shovill with velvet
|
||
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
|
||
|
|
tags:
|
||
|
|
- shovill
|
||
|
|
- shovill_velvet
|
||
|
|
files:
|
||
|
|
# MD5sum not reproducible (timestamp, contig order)
|
||
|
|
- path: output/shovill/contigs.fa
|
||
|
|
- path: output/shovill/contigs.LastGraph
|
||
|
|
- path: output/shovill/shovill.corrections
|
||
|
|
- path: output/shovill/shovill.log
|
||
|
|
- path: output/shovill/velvet.fasta
|