nf-core_modules/software/bedtools/complement/main.nf

process BEDTOOLS_COMPLEMENT {
    tag {input_file}

    container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'

    input:
    path (input_file)
    path (fasta_sizes)
    val (bedtools_complement_args)

    output:
    stdout()

    script:
    """
    bedtools complement -i ${input_file} -g ${fasta_sizes} ${bedtools_complement_args}
    """
}