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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
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name: last_mafconvert
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description: Converts MAF alignments in another format.
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keywords:
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- LAST
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- convert
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- alignment
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- MAF
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tools:
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- last:
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description: LAST finds & aligns related regions of sequences.
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homepage: https://gitlab.com/mcfrith/last
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documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/
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tool_dev_url: https://gitlab.com/mcfrith/last
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doi: ""
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licence: ['GPL v3-or-later']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- maf:
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type: file
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description: Multiple Aligment Format (MAF) file, compressed with gzip
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pattern: "*.{maf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- alm:
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type: file
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description: Gzipped pairwise alignmnet in TAB or other formats
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pattern: "*.{axt,blast,blasttab,chain,gff,html,psl,sam,tab}.gz"
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authors:
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- "@aleksandrabliznina"
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