nf-core_modules/tests/modules/deepvariant/test.yml

- name: deepvariant
  command: nextflow run ./tests/modules/deepvariant -entry test_deepvariant -c tests/config/nextflow.config
  tags:
    - deepvariant
  files:
    - path: output/deepvariant/test_out.vcf.gz
      md5sum: 66d86be7a9bafe1f5c6304ebee18ee20
    - path: output/deepvariant/test_out.g.vcf.gz
      md5sum: 4ca868f0a4fdb17a280c3ed083d228e0
module: deepvariant (#572) * Add stubs for deepvariant [ci skip] * Update the stubs for deepvariant [ci skip] * functional with google docker image * cleanup * consume docker container within singularity executor * update the meta.yml file and ask for review * tweak the input channel shape and test data * tweak input data [ci skip] * update for the new syntax * remove the functions and rename meta vars * Update the arguments mechanism * update chr, region and checksum Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> 2022-01-17 10:25:36 +00:00			`- name: deepvariant`
			`command: nextflow run ./tests/modules/deepvariant -entry test_deepvariant -c tests/config/nextflow.config`
			`tags:`
			`- deepvariant`
			`files:`
			`- path: output/deepvariant/test_out.vcf.gz`
			`md5sum: 66d86be7a9bafe1f5c6304ebee18ee20`
			`- path: output/deepvariant/test_out.g.vcf.gz`
			`md5sum: 4ca868f0a4fdb17a280c3ed083d228e0`