nf-core_modules/software/bandage/image/meta.yml

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2021-02-04 18:10:54 +00:00
name: bandage_image
2021-02-04 01:31:58 +00:00
description: Render an assembly graph in GFA 1.0 format to PNG and SVG image formats
keywords:
- gfa
- graph
- assembly
- visualisation
tools:
- bandage:
description: |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
homepage: https://github.com/rrwick/Bandage
documentation: https://github.com/rrwick/Bandage
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gfa:
type: file
description: Assembly graph in GFA 1.0 format
pattern: "*.gfa"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- png:
type: file
description: Bandage image in PNG format
pattern: "*.png"
- svg:
type: file
description: Bandage image in SVG format
pattern: "*.svg"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@heuermh"