2020-08-07 07:38:01 -04:00
|
|
|
name: bwa_index
|
|
|
|
|
description: Create BWA index for reference genome
|
2020-08-05 12:27:28 -04:00
|
|
|
keywords:
|
2020-08-07 10:05:25 -04:00
|
|
|
- index
|
|
|
|
|
- fasta
|
|
|
|
|
- genome
|
|
|
|
|
- reference
|
2020-08-05 12:27:28 -04:00
|
|
|
tools:
|
2020-08-07 10:05:25 -04:00
|
|
|
- bwa:
|
|
|
|
|
description: |
|
|
|
|
|
BWA is a software package for mapping DNA sequences against
|
|
|
|
|
a large reference genome, such as the human genome.
|
|
|
|
|
homepage: http://bio-bwa.sourceforge.net/
|
|
|
|
|
documentation: http://www.htslib.org/doc/samtools.html
|
|
|
|
|
arxiv: arXiv:1303.3997
|
2020-08-05 12:27:28 -04:00
|
|
|
input:
|
2020-08-07 10:05:25 -04:00
|
|
|
- fasta:
|
|
|
|
|
type: file
|
|
|
|
|
description: Input genome fasta file
|
2020-08-05 12:27:28 -04:00
|
|
|
output:
|
2020-08-07 10:05:25 -04:00
|
|
|
- index:
|
|
|
|
|
type: file
|
|
|
|
|
description: BWA genome index files
|
|
|
|
|
pattern: "*.{amb,ann,bwt,pac,sa}"
|
|
|
|
|
- version:
|
|
|
|
|
type: file
|
|
|
|
|
description: File containing software version
|
|
|
|
|
pattern: "*.{version.txt}"
|
2020-08-05 12:27:28 -04:00
|
|
|
authors:
|
2020-08-07 10:05:25 -04:00
|
|
|
- "@drpatelh"
|
|
|
|
|
- "@maxulysse"
|
