nf-core_modules/tools/tcoffee/main.nf

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2020-03-05 16:18:35 +00:00
process tcoffee {
tag {fasta}
// publishDir "${params.outdir}/tcoffee" //not working
publishDir "${baseDir}/results/tcoffee", mode: 'copy'
container 'quay.io/biocontainers/t_coffee:11.0.8--py27pl5.22.0_5'
input:
path(fasta)
output:
path("${fasta}.aln")
script:
"""
t_coffee -seq $fasta -outfile ${fasta}.aln
"""
}