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18 lines
366 B
Text
18 lines
366 B
Text
process tcoffee {
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tag {fasta}
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// publishDir "${params.outdir}/tcoffee" //not working
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publishDir "${baseDir}/results/tcoffee", mode: 'copy'
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container 'quay.io/biocontainers/t_coffee:11.0.8--py27pl5.22.0_5'
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input:
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path(fasta)
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output:
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path("${fasta}.aln")
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script:
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"""
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t_coffee -seq $fasta -outfile ${fasta}.aln
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"""
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}
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