nf-core_modules/software/htslib/tabix/main.nf

process htslib_tabix {
    tag "$vcf"

    container 'quay.io/biocontainers/tabix:0.2.6--ha92aebf_0'

    input:
        path vcf

    output:
        path "${vcf}.tbi"

    script:
    """
    tabix -p vcf ${vcf}
    """
}
add htslib tabix to index bgzipped vcf files 2020-01-23 10:35:49 +00:00			`process htslib_tabix {`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`tag "$vcf"`
add htslib tabix to index bgzipped vcf files 2020-01-23 10:35:49 +00:00
			`container 'quay.io/biocontainers/tabix:0.2.6--ha92aebf_0'`

			`input:`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`path vcf`
add htslib tabix to index bgzipped vcf files 2020-01-23 10:35:49 +00:00
			`output:`
Minor style improvents This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses 2020-07-27 10:11:42 +00:00			`path "${vcf}.tbi"`
add htslib tabix to index bgzipped vcf files 2020-01-23 10:35:49 +00:00
			`script:`
			`"""`
			`tabix -p vcf ${vcf}`
			`"""`
			`}`