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https://github.com/MillironX/nf-core_modules.git
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27 lines
1.5 KiB
YAML
27 lines
1.5 KiB
YAML
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- name: Run qualimap bamqc test workflow
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command: nextflow run ./tests/software/qualimap/bamqc -entry test_qualimap_bamqc -c tests/config/nextflow.config
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tags:
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- qualimap
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- qualimap_bamqc
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files:
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- path: output/qualimap/test/raw_data_qualimapReport/coverage_across_reference.txt
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md5sum: 0e2ae3deae8adbe6c66db4dadb260c76
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- path: output/qualimap/test/raw_data_qualimapReport/coverage_histogram.txt
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md5sum: 0e9f37aabb761969526f445ed8d3173b
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- path: output/qualimap/test/raw_data_qualimapReport/duplication_rate_histogram.txt
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md5sum: 2299c92a3049270b9d7b1f521cafbb86
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- path: output/qualimap/test/raw_data_qualimapReport/genome_fraction_coverage.txt
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md5sum: 89c8c882c9423fafe03b4fc98e2bfb5a
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- path: output/qualimap/test/raw_data_qualimapReport/insert_size_across_reference.txt
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md5sum: 966230f2bbe796788beac30678597e79
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- path: output/qualimap/test/raw_data_qualimapReport/insert_size_histogram.txt
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md5sum: b3049afc6c3c57c3b278abd66a66a690
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- path: output/qualimap/test/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
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md5sum: e9e0189463430b5565ea6da1d5976e40
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- path: output/qualimap/test/raw_data_qualimapReport/mapped_reads_nucleotide_content.txt
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md5sum: fa1566299e1bcd2d65c95b32ae2ca3d1
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- path: output/qualimap/test/raw_data_qualimapReport/mapping_quality_across_reference.txt
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md5sum: 40b6951739a602da545e38a00b698fde
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- path: output/qualimap/test/raw_data_qualimapReport/mapping_quality_histogram.txt
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md5sum: c66579f0114a9aedc70820fa609fb1ec
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