2022-07-18 15:15:08 +00:00
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- name: emboss seqret test_emboss_seqret_gb2embl
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command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2embl -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
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tags:
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- emboss
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- emboss/seqret
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files:
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- path: output/emboss/test.embl
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md5sum: 4810933b1b2174f7067d9afa1da8b01b
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contains: ["ID NZ_CP069563;"] # Human-readable test for correct format and sequence
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- name: emboss seqret test_emboss_seqret_gb2gff
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command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2gff -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
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tags:
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- emboss
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- emboss/seqret
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files:
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- path: output/emboss/test.gff
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md5sum: 65720c327927edbabc63f9e76afbeb31
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contains:
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- "##gff-version 3" # Human-readable test for correct format
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- ">NZ_CP069563" # Human-readable test for correct sequence
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- name: emboss seqret test_emboss_seqret_gb2pir
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command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2pir -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
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tags:
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- emboss
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- emboss/seqret
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files:
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- path: output/emboss/test.pir
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md5sum: 49f4a28533e970aa2438d8adf55a26bb
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contains: [">D1;NZ_CP069563"] # Human-readable test for correct format and sequence
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- name: emboss seqret test_emboss_seqret_gb2fasta
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command: nextflow run ./tests/modules/emboss/seqret -entry test_emboss_seqret_gb2fasta -c ./tests/config/nextflow.config -c ./tests/modules/emboss/seqret/nextflow.config
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tags:
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- emboss
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- emboss/seqret
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files:
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- path: output/emboss/test.fasta
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md5sum: 0694275f05780aeb0b54d46687603f44
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contains: [">NZ_CP069563"] # Human-readable test for correct format and sequence
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