nf-core_modules/tests/modules/stringtie/merge/test.yml

- name: stringtie merge forward-strand
  command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: ./output/stringtie/stringtie.merged.gtf
      contains:
      - 'stringtie'
      - 'merge'
      - 'chr22'

- name: stringtie merge reverse-strand
  command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
  tags:
    - stringtie
    - stringtie/merge
  files:
    - path: ./output/stringtie/stringtie.merged.gtf
      contains:
      - 'stringtie'
      - 'merge'
      - 'chr22'
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- name: stringtie merge forward-strand`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config`
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error 2021-05-03 05:18:51 +00:00			`tags:`
			`- stringtie`
			`- stringtie/merge`
			`files:`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: ./output/stringtie/stringtie.merged.gtf`
Add option -p to set the # of cpus on stringtie (#601) * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-07-21 13:38:40 +00:00			`contains:`
			`- 'stringtie'`
			`- 'merge'`
			`- 'chr22'`
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error 2021-05-03 05:18:51 +00:00
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- name: stringtie merge reverse-strand`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config`
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error 2021-05-03 05:18:51 +00:00			`tags:`
			`- stringtie`
			`- stringtie/merge`
			`files:`
Fix more version commands (#750) * Fix outstanding tests * Fix more version commands * Fix remaining modules 2021-09-28 05:56:27 +00:00			`- path: ./output/stringtie/stringtie.merged.gtf`
Add option -p to set the # of cpus on stringtie (#601) * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-07-21 13:38:40 +00:00			`contains:`
			`- 'stringtie'`
			`- 'merge'`
			`- 'chr22'`