2021-09-03 07:28:28 +00:00
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name: bbmap_index
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2022-07-06 10:03:08 +00:00
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description: Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
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2021-09-03 07:28:28 +00:00
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keywords:
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2022-07-06 10:03:08 +00:00
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- map
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2021-09-03 07:28:28 +00:00
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- index
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- fasta
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tools:
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- bbmap:
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description: BBMap is a short read aligner, as well as various other bioinformatic tools.
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homepage: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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documentation: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
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tool_dev_url: None
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doi: ""
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2022-02-15 11:15:27 +00:00
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licence: ["UC-LBL license (see package)"]
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2021-09-03 07:28:28 +00:00
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input:
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- fasta:
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type: fasta
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description: fasta formatted file with nucleotide sequences
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pattern: "*.{fna,fa,fasta}"
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output:
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2021-10-03 07:20:26 +00:00
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- versions:
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2021-09-03 07:28:28 +00:00
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type: file
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2021-10-03 07:20:26 +00:00
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description: File containing software versions
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2021-09-27 08:41:24 +00:00
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pattern: "versions.yml"
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2021-09-03 07:28:28 +00:00
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- db:
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type: directory
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description: Directory with index files
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pattern: "ref"
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authors:
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- "@daniellundin"
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