nf-core_modules/tests/modules/ensemblvep/test.yml

- name: ensemblvep test_ensemblvep_fasta_json
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_json -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.json
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta_tab
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_tab -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.tab
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta_vcf
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta_vcf_bgzip
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf_bgzip -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf.gz
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta_vcf_gzip
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf_gzip -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf.gz
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_no_fasta
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_no_fasta -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf
    - path: output/ensemblvep/test.summary.html

- name: ensemblvep test_ensemblvep_fasta_vcf_stub
  command: nextflow run ./tests/modules/ensemblvep -entry test_ensemblvep_fasta_vcf -c ./tests/config/nextflow.config  -c ./tests/modules/ensemblvep/nextflow.config -stub
  tags:
    - ensemblvep
  files:
    - path: output/ensemblvep/test.ann.vcf
    - path: output/ensemblvep/test.summary.html