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31 lines
977 B
YAML
31 lines
977 B
YAML
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name: bedtools complement
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description: Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file
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keywords:
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- complement
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tools:
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- bedtools:
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description: |
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Bedtools is a software package that provides with a toolset to perform genome arithmetic operations.
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homepage: https://bedtools.readthedocs.io/en/latest/index.html
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documentation: https://bedtools.readthedocs.io/en/latest/index.html
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doi: 10.093/bioinformatics/btq033
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input:
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-
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- input_file:
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type: file
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description: Input genomic coordinates file
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pattern: "*.{bed,gff,vcf}"
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- fasta_sizes:
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type: file
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description: Genome chromosome sizes
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pattern: "*.{txt,sizes}"
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output:
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-
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- index:
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type: stdout,file
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description:
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pattern: "stdout,*.{bed,gff,vcf}"
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authors:
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- "@JoseEspinosa"
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