mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
48 lines
1.6 KiB
YAML
48 lines
1.6 KiB
YAML
|
- name: entrezdirect esearch test_entrezdirect_esearch_pubmed
|
||
|
|
command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_pubmed -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esearch/nextflow.config
|
||
|
|
tags:
|
||
|
|
- entrezdirect/esearch
|
||
|
|
- entrezdirect
|
||
|
|
files:
|
||
|
|
- path: output/entrezdirect/test_pubmed.xml
|
||
|
|
contains:
|
||
|
|
- "<ENTREZ_DIRECT>"
|
||
|
|
- "<Db>pubmed</Db>"
|
||
|
|
- "<WebEnv>"
|
||
|
|
- "<QueryKey>"
|
||
|
|
- "<Step>"
|
||
|
|
- "<Count>"
|
||
|
|
- "</ENTREZ_DIRECT>"
|
||
|
|
|
||
|
|
- name: entrezdirect esearch test_entrezdirect_esearch_genome
|
||
|
|
command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_genome -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esearch/nextflow.config
|
||
|
|
tags:
|
||
|
|
- entrezdirect/esearch
|
||
|
|
- entrezdirect
|
||
|
|
files:
|
||
|
|
- path: output/entrezdirect/test_genome.xml
|
||
|
|
contains:
|
||
|
|
- "<ENTREZ_DIRECT>"
|
||
|
|
- "<Db>genome</Db>"
|
||
|
|
- "<WebEnv>"
|
||
|
|
- "<QueryKey>"
|
||
|
|
- "<Count>"
|
||
|
|
- "<Step>"
|
||
|
|
- "</ENTREZ_DIRECT>"
|
||
|
|
|
||
|
|
- name: entrezdirect esearch test_entrezdirect_esearch_assembly
|
||
|
|
command: nextflow run ./tests/modules/entrezdirect/esearch -entry test_entrezdirect_esearch_assembly -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esearch/nextflow.config
|
||
|
|
tags:
|
||
|
|
- entrezdirect/esearch
|
||
|
|
- entrezdirect
|
||
|
|
files:
|
||
|
|
- path: output/entrezdirect/test_assembly.xml
|
||
|
|
contains:
|
||
|
|
- "<ENTREZ_DIRECT>"
|
||
|
|
- "<Db>assembly</Db>"
|
||
|
|
- "<WebEnv>"
|
||
|
|
- "<QueryKey>"
|
||
|
|
- "<Count>"
|
||
|
|
- "<Step>"
|
||
|
|
- "</ENTREZ_DIRECT>"
|