nf-core_modules/modules/deeptools/plotfingerprint/meta.yml

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name: deeptools_plotfingerprint
description: plots cumulative reads coverages by BAM file
keywords:
- plot
- fingerprint
- cumulative coverage
- bam
tools:
- deeptools:
description: A set of user-friendly tools for normalization and visualization of deep-sequencing data
homepage:
documentation: https://deeptools.readthedocs.io/en/develop/index.html
tool_dev_url: https://github.com/deeptools/deepTools
doi: "10.1093/nar/gku365"
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- bam:
type: file
description: One or more BAM files
pattern: "*.{bam}"
- bais:
type: file
description: Corresponding BAM file indexes
pattern: "*.bam.bai"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pdf:
type: file
description: |
Output figure containing resulting plot
pattern: "*.{plotFingerprint.pdf}"
- matrix:
type: file
description: |
Output file summarizing the read counts per bin
pattern: "*.{plotFingerprint.raw.txt}"
- metrics:
type: file
description: |
file containing BAM file quality metrics
pattern: "*.{qcmetrics.txt}"
- version:
type: file
description: File containing software version
pattern: "versions.yml"
authors:
- "@emiller88"
- "@drpatelh"
- "@joseespinosa"