nf-core_modules/modules/msisensorpro/scan/meta.yml

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name: msisensorpro_scan
description: MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input
keywords:
- micro-satellite-scan
- msisensor-pro
- scan
tools:
- msisensorpro:
description: Microsatellite Instability (MSI) detection using high-throughput sequencing data.
homepage: https://github.com/xjtu-omics/msisensor-pro
documentation: https://github.com/xjtu-omics/msisensor-pro/wiki
tool_dev_url: https://github.com/xjtu-omics/msisensor-pro
doi: "doi.org/10.1016/j.gpb.2020.02.001"
licence: ['Custom Licence']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Reference genome
pattern: "*.{fasta}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- list:
type: file
description: File containing microsatellite list
pattern: "*.{list}"
authors:
- "@FriederikeHanssen"