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c8ebd0de36
* Add msisensorpro * remove absolute paths * fixing tests * fix msisensorpro tests * Update modules/msisensorpro/msi_somatic/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * Update modules/msisensorpro/msi_somatic/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * add when back in * add when back in * Update modules/msisensorpro/msi_somatic/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * update description * Update main.nf * Update main.nf * Update main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: msisensorpro_scan
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description: MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input
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keywords:
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- micro-satellite-scan
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- msisensor-pro
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- scan
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tools:
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- msisensorpro:
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description: Microsatellite Instability (MSI) detection using high-throughput sequencing data.
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homepage: https://github.com/xjtu-omics/msisensor-pro
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documentation: https://github.com/xjtu-omics/msisensor-pro/wiki
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tool_dev_url: https://github.com/xjtu-omics/msisensor-pro
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doi: "doi.org/10.1016/j.gpb.2020.02.001"
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licence: ['Custom Licence']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Reference genome
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pattern: "*.{fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- list:
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type: file
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description: File containing microsatellite list
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pattern: "*.{list}"
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authors:
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- "@FriederikeHanssen"
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