mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
|
name: bcftools_annotate
|
||
|
|
description: Add or remove annotations.
|
||
|
|
keywords:
|
||
|
|
- bcftools
|
||
|
|
- annotate
|
||
|
|
- vcf
|
||
|
|
- remove
|
||
|
|
- add
|
||
|
|
tools:
|
||
|
|
- annotate:
|
||
|
|
description: Add or remove annotations.
|
||
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
||
|
|
documentation: https://samtools.github.io/bcftools/bcftools.html#annotate
|
||
|
|
doi: 10.1093/bioinformatics/btp352
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- input:
|
||
|
|
type: files
|
||
|
|
description: Query VCF or BCF file, can be either uncompressed or compressed
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: Compressed annotated VCF file
|
||
|
|
pattern: "*_annotated.vcf.gz"
|
||
|
|
- bcf:
|
||
|
|
type: file
|
||
|
|
description: Compressed annotated BCF file
|
||
|
|
pattern: "*_annotated.bcf"
|
||
|
|
authors:
|
||
|
|
- "@projectoriented"
|