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ef811d952b
* bcf annotate ready2go * edited output name * fixed output * updated bcftools ver * changed contain output string * removed contain key entirely * fixed md5sum for test.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: bcftools_annotate
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description: Add or remove annotations.
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keywords:
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- bcftools
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- annotate
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- vcf
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- remove
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- add
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tools:
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- annotate:
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description: Add or remove annotations.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: https://samtools.github.io/bcftools/bcftools.html#annotate
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doi: 10.1093/bioinformatics/btp352
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input:
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type: files
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description: Query VCF or BCF file, can be either uncompressed or compressed
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Compressed annotated VCF file
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pattern: "*_annotated.vcf.gz"
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- bcf:
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type: file
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description: Compressed annotated BCF file
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pattern: "*_annotated.bcf"
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authors:
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- "@projectoriented"
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