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nf-core_modules/tests/modules/damageprofiler/test.yml

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damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- name: damageprofiler
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler -c tests/config/nextflow.config -dump-channels
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/3p_freq_misincorporations.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: de3b84d946a6b63cdcfadf82bf6854c0
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/3pGtoA_freq.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 61c903b1504ed7d7182570dfc75e4498
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/5pCtoT_freq.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 15a75b60ee519b61ce04a83fe3afe855
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/5p_freq_misincorporations.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/DamagePlot_five_prime.svg
- path: output/damageprofiler/test/DamagePlot.pdf
- path: output/damageprofiler/test/DamagePlot_three_prime.svg
- path: output/damageprofiler/test/DamageProfiler.log
contains:
- "FINISHED SUCCESSFULLY"
- path: output/damageprofiler/test/dmgprof.json
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/DNA_comp_genome.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: fea48af1ecf491b439d36d4a919473df
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/DNA_composition_sample.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/edit_distance.pdf
- path: output/damageprofiler/test/edit_distance.svg
- path: output/damageprofiler/test/editDistance.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: 04d14b449a5afa8b5dbff0dfa762356b
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/Length_plot_combined_data.svg
- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
- path: output/damageprofiler/test/Length_plot.pdf
- path: output/damageprofiler/test/lgdistribution.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: df2e19195185ea9ee05e8e84b2948f36
damageprofiler (#545) * Add damageprofiler module * Fix tests * Bump container hopefully with font fix * Following code review
2021-06-30 07:46:24 +00:00
- path: output/damageprofiler/test/misincorporation.txt
fix: reduce number of required input files for damage profiler (#612) * Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
2021-10-20 08:02:30 +00:00
md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
- name: damageprofiler_reference
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_reference -c tests/config/nextflow.config -dump-channels
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/3p_freq_misincorporations.txt
md5sum: de3b84d946a6b63cdcfadf82bf6854c0
- path: output/damageprofiler/test/3pGtoA_freq.txt
md5sum: 61c903b1504ed7d7182570dfc75e4498
- path: output/damageprofiler/test/5pCtoT_freq.txt
md5sum: 15a75b60ee519b61ce04a83fe3afe855
- path: output/damageprofiler/test/5p_freq_misincorporations.txt
md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
- path: output/damageprofiler/test/DamagePlot_five_prime.svg
- path: output/damageprofiler/test/DamagePlot.pdf
- path: output/damageprofiler/test/DamagePlot_three_prime.svg
- path: output/damageprofiler/test/DamageProfiler.log
contains:
- "FINISHED SUCCESSFULLY"
- path: output/damageprofiler/test/dmgprof.json
md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
- path: output/damageprofiler/test/DNA_comp_genome.txt
md5sum: fea48af1ecf491b439d36d4a919473df
- path: output/damageprofiler/test/DNA_composition_sample.txt
md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
- path: output/damageprofiler/test/edit_distance.pdf
- path: output/damageprofiler/test/edit_distance.svg
- path: output/damageprofiler/test/editDistance.txt
md5sum: 04d14b449a5afa8b5dbff0dfa762356b
- path: output/damageprofiler/test/Length_plot_combined_data.svg
- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
- path: output/damageprofiler/test/Length_plot.pdf
- path: output/damageprofiler/test/lgdistribution.txt
md5sum: df2e19195185ea9ee05e8e84b2948f36
- path: output/damageprofiler/test/misincorporation.txt
md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
- name: damageprofiler_specieslist
command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_specieslist -c tests/config/nextflow.config -dump-channels
tags:
- damageprofiler
files:
- path: output/damageprofiler/test/chr22/3p_freq_misincorporations.txt
md5sum: de3b84d946a6b63cdcfadf82bf6854c0
- path: output/damageprofiler/test/chr22/3pGtoA_freq.txt
md5sum: 61c903b1504ed7d7182570dfc75e4498
- path: output/damageprofiler/test/chr22/5pCtoT_freq.txt
md5sum: 15a75b60ee519b61ce04a83fe3afe855
- path: output/damageprofiler/test/chr22/5p_freq_misincorporations.txt
md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
- path: output/damageprofiler/test/chr22/DamagePlot_five_prime.svg
- path: output/damageprofiler/test/chr22/DamagePlot.pdf
- path: output/damageprofiler/test/chr22/DamagePlot_three_prime.svg
- path: output/damageprofiler/test/DamageProfiler.log
contains:
- "FINISHED SUCCESSFULLY"
- path: output/damageprofiler/test/chr22/dmgprof.json
md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
- path: output/damageprofiler/test/chr22/DNA_comp_genome.txt
md5sum: fea48af1ecf491b439d36d4a919473df
- path: output/damageprofiler/test/chr22/DNA_composition_sample.txt
md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
- path: output/damageprofiler/test/chr22/edit_distance.pdf
- path: output/damageprofiler/test/chr22/edit_distance.svg
- path: output/damageprofiler/test/chr22/editDistance.txt
md5sum: 04d14b449a5afa8b5dbff0dfa762356b
- path: output/damageprofiler/test/chr22/Length_plot_combined_data.svg
- path: output/damageprofiler/test/chr22/Length_plot_forward_reverse_separated.svg
- path: output/damageprofiler/test/chr22/Length_plot.pdf
- path: output/damageprofiler/test/chr22/lgdistribution.txt
md5sum: df2e19195185ea9ee05e8e84b2948f36
- path: output/damageprofiler/test/chr22/misincorporation.txt
md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
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