mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
97fe899f79
* Reduce number of required input files for damage profiler * Remove rebugging * Add optional species list file. * Working pending updated test-dataset update * Add genome header to config
110 lines
5.6 KiB
YAML
110 lines
5.6 KiB
YAML
- name: damageprofiler
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command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler -c tests/config/nextflow.config -dump-channels
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tags:
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- damageprofiler
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files:
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- path: output/damageprofiler/test/3p_freq_misincorporations.txt
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md5sum: de3b84d946a6b63cdcfadf82bf6854c0
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- path: output/damageprofiler/test/3pGtoA_freq.txt
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md5sum: 61c903b1504ed7d7182570dfc75e4498
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- path: output/damageprofiler/test/5pCtoT_freq.txt
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md5sum: 15a75b60ee519b61ce04a83fe3afe855
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- path: output/damageprofiler/test/5p_freq_misincorporations.txt
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md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
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- path: output/damageprofiler/test/DamagePlot_five_prime.svg
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- path: output/damageprofiler/test/DamagePlot.pdf
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- path: output/damageprofiler/test/DamagePlot_three_prime.svg
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- path: output/damageprofiler/test/DamageProfiler.log
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contains:
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- "FINISHED SUCCESSFULLY"
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- path: output/damageprofiler/test/dmgprof.json
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md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
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- path: output/damageprofiler/test/DNA_comp_genome.txt
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md5sum: fea48af1ecf491b439d36d4a919473df
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- path: output/damageprofiler/test/DNA_composition_sample.txt
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md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
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- path: output/damageprofiler/test/edit_distance.pdf
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- path: output/damageprofiler/test/edit_distance.svg
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- path: output/damageprofiler/test/editDistance.txt
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md5sum: 04d14b449a5afa8b5dbff0dfa762356b
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- path: output/damageprofiler/test/Length_plot_combined_data.svg
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- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
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- path: output/damageprofiler/test/Length_plot.pdf
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- path: output/damageprofiler/test/lgdistribution.txt
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md5sum: df2e19195185ea9ee05e8e84b2948f36
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- path: output/damageprofiler/test/misincorporation.txt
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md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
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- name: damageprofiler_reference
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command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_reference -c tests/config/nextflow.config -dump-channels
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tags:
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- damageprofiler
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files:
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- path: output/damageprofiler/test/3p_freq_misincorporations.txt
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md5sum: de3b84d946a6b63cdcfadf82bf6854c0
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- path: output/damageprofiler/test/3pGtoA_freq.txt
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md5sum: 61c903b1504ed7d7182570dfc75e4498
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- path: output/damageprofiler/test/5pCtoT_freq.txt
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md5sum: 15a75b60ee519b61ce04a83fe3afe855
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- path: output/damageprofiler/test/5p_freq_misincorporations.txt
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md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
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- path: output/damageprofiler/test/DamagePlot_five_prime.svg
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- path: output/damageprofiler/test/DamagePlot.pdf
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- path: output/damageprofiler/test/DamagePlot_three_prime.svg
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- path: output/damageprofiler/test/DamageProfiler.log
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contains:
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- "FINISHED SUCCESSFULLY"
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- path: output/damageprofiler/test/dmgprof.json
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md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
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- path: output/damageprofiler/test/DNA_comp_genome.txt
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md5sum: fea48af1ecf491b439d36d4a919473df
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- path: output/damageprofiler/test/DNA_composition_sample.txt
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md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
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- path: output/damageprofiler/test/edit_distance.pdf
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- path: output/damageprofiler/test/edit_distance.svg
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- path: output/damageprofiler/test/editDistance.txt
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md5sum: 04d14b449a5afa8b5dbff0dfa762356b
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- path: output/damageprofiler/test/Length_plot_combined_data.svg
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- path: output/damageprofiler/test/Length_plot_forward_reverse_separated.svg
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- path: output/damageprofiler/test/Length_plot.pdf
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- path: output/damageprofiler/test/lgdistribution.txt
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md5sum: df2e19195185ea9ee05e8e84b2948f36
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- path: output/damageprofiler/test/misincorporation.txt
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md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
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- name: damageprofiler_specieslist
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command: nextflow run ./tests/modules/damageprofiler -entry test_damageprofiler_specieslist -c tests/config/nextflow.config -dump-channels
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tags:
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- damageprofiler
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files:
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- path: output/damageprofiler/test/chr22/3p_freq_misincorporations.txt
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md5sum: de3b84d946a6b63cdcfadf82bf6854c0
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- path: output/damageprofiler/test/chr22/3pGtoA_freq.txt
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md5sum: 61c903b1504ed7d7182570dfc75e4498
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- path: output/damageprofiler/test/chr22/5pCtoT_freq.txt
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md5sum: 15a75b60ee519b61ce04a83fe3afe855
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- path: output/damageprofiler/test/chr22/5p_freq_misincorporations.txt
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md5sum: 3b3240d6c1a3491e461b39199a9fcfe3
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- path: output/damageprofiler/test/chr22/DamagePlot_five_prime.svg
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- path: output/damageprofiler/test/chr22/DamagePlot.pdf
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- path: output/damageprofiler/test/chr22/DamagePlot_three_prime.svg
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- path: output/damageprofiler/test/DamageProfiler.log
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contains:
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- "FINISHED SUCCESSFULLY"
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- path: output/damageprofiler/test/chr22/dmgprof.json
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md5sum: 2e54e712d2ae9e32c4c298e5fd8f60fe
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- path: output/damageprofiler/test/chr22/DNA_comp_genome.txt
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md5sum: fea48af1ecf491b439d36d4a919473df
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- path: output/damageprofiler/test/chr22/DNA_composition_sample.txt
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md5sum: 9e17a0b1e5ad4eb13201cd24ad8507dd
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- path: output/damageprofiler/test/chr22/edit_distance.pdf
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- path: output/damageprofiler/test/chr22/edit_distance.svg
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- path: output/damageprofiler/test/chr22/editDistance.txt
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md5sum: 04d14b449a5afa8b5dbff0dfa762356b
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- path: output/damageprofiler/test/chr22/Length_plot_combined_data.svg
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- path: output/damageprofiler/test/chr22/Length_plot_forward_reverse_separated.svg
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- path: output/damageprofiler/test/chr22/Length_plot.pdf
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- path: output/damageprofiler/test/chr22/lgdistribution.txt
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md5sum: df2e19195185ea9ee05e8e84b2948f36
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- path: output/damageprofiler/test/chr22/misincorporation.txt
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md5sum: bec0c5fc2fa9c82b04949e2d8b6e979c
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