nf-core_modules/modules/salmon/index/meta.yml

37 lines
918 B
YAML
Raw Normal View History

2021-01-26 15:18:46 +00:00
name: salmon_index
2021-01-26 15:12:41 +00:00
description: Create index for salmon
keywords:
- index
- fasta
- genome
- reference
tools:
- salmon:
2021-01-26 15:12:41 +00:00
description: |
Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
homepage: https://salmon.readthedocs.io/en/latest/salmon.html
manual: https://salmon.readthedocs.io/en/latest/salmon.html
doi: 10.1038/nmeth.4197
licence: ["GPL-3.0-or-later"]
2021-01-26 15:12:41 +00:00
input:
- genome_fasta:
type: file
description: Fasta file of the reference genome
- transcriptome_fasta:
type: file
description: Fasta file of the reference transcriptome
output:
- index:
type: directory
description: Folder containing the star index files
pattern: "salmon"
- versions:
2021-01-26 15:12:41 +00:00
type: file
description: File containing software versions
pattern: "versions.yml"
2021-01-26 15:12:41 +00:00
authors:
- "@kevinmenden"
- "@drpatelh"