nf-core_modules/modules/salmon/index/meta.yml

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name: salmon_index
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description: Create index for salmon
keywords:
- index
- fasta
- genome
- reference
tools:
- salmon:
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description: |
Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
homepage: https://salmon.readthedocs.io/en/latest/salmon.html
manual: https://salmon.readthedocs.io/en/latest/salmon.html
doi: 10.1038/nmeth.4197
input:
- genome_fasta:
type: file
description: Fasta file of the reference genome
- transcriptome_fasta:
type: file
description: Fasta file of the reference transcriptome
output:
- index:
type: directory
description: Folder containing the star index files
pattern: "salmon"
- version:
type: file
description: File containing software version
pattern: "versions.yml"
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authors:
- "@kevinmenden"
- "@drpatelh"