2022-02-04 14:29:44 +00:00
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name: svdb_merge
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description: The merge module merges structural variants within one or more vcf files.
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keywords:
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- structural variants
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tools:
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- svdb:
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description: structural variant database software
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homepage: https://github.com/J35P312/SVDB
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documentation: https://github.com/J35P312/SVDB/blob/master/README.md
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2022-02-15 11:15:27 +00:00
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licence: ["MIT"]
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2022-02-04 14:29:44 +00:00
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- priority:
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type: list
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description: prioritise the input vcf files according to this list, e.g ['tiddit','cnvnator']
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- vcfs:
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type: list
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description: Two or more VCF files. Order of files should correspond to the order of tags used for priority.
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pattern: "*.{vcf,vcf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: merged VCF file
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pattern: "*_sv_merge.vcf"
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authors:
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- "@ramprasadn"
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