mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.1 KiB
YAML
39 lines
1.1 KiB
YAML
name: svdb_merge
|
|
description: The merge module merges structural variants within one or more vcf files.
|
|
keywords:
|
|
- structural variants
|
|
tools:
|
|
- svdb:
|
|
description: structural variant database software
|
|
homepage: https://github.com/J35P312/SVDB
|
|
documentation: https://github.com/J35P312/SVDB/blob/master/README.md
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- priority:
|
|
type: list
|
|
description: prioritise the input vcf files according to this list, e.g ['tiddit','cnvnator']
|
|
- vcfs:
|
|
type: list
|
|
description: Two or more VCF files. Order of files should correspond to the order of tags used for priority.
|
|
pattern: "*.{vcf,vcf.gz}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: merged VCF file
|
|
pattern: "*_sv_merge.vcf"
|
|
authors:
|
|
- "@ramprasadn"
|