nf-core_modules/tests/software/spades/test.yml

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- name: spades single end
command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
tags:
- spades
files:
- path: output/spades/test.assembly.gfa
md5sum: b2616d2beba83ab7d361b54778d1e759
- path: output/spades/test.contigs.fa
md5sum: 2690fefde046bc904e90df09a065257a
- path: output/spades/test.scaffolds.fa
md5sum: 2690fefde046bc904e90df09a065257a
- path: output/spades/test.spades.log
- name: spades paired end
command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
tags:
- spades
files:
- path: output/spades/test.assembly.gfa
md5sum: faf76135ee390606b899c0197dc38e04
- path: output/spades/test.contigs.fa
md5sum: 6148e25b33890c80f176f90f2dd88989
- path: output/spades/test.spades.log