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15 lines
591 B
Text
15 lines
591 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { CNVKIT_REFERENCE } from '../../../../modules/cnvkit/reference/main.nf'
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workflow test_cnvkit_reference {
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
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targets = file(params.test_data['homo_sapiens']['genome']['genome_21_multi_interval_bed'], checkIfExists: true)
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antitargets = file("/Users/susanne/Documents/repos/forks/modules/test_antitarget/output/cnvkit/test.antitarget.bed", checkIfExists: true)
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CNVKIT_REFERENCE ( fasta, targets, antitargets )
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}
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