nf-core_modules/tests/modules/cnvkit/reference/main.nf
2022-05-23 18:35:50 +02:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { CNVKIT_REFERENCE } from '../../../../modules/cnvkit/reference/main.nf'
workflow test_cnvkit_reference {
fasta = file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
targets = file(params.test_data['homo_sapiens']['genome']['genome_21_multi_interval_bed'], checkIfExists: true)
antitargets = file("/Users/susanne/Documents/repos/forks/modules/test_antitarget/output/cnvkit/test.antitarget.bed", checkIfExists: true)
CNVKIT_REFERENCE ( fasta, targets, antitargets )
}