nf-core_modules/tests/modules/blast/blastn/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { BLAST_MAKEBLASTDB } from '../../../../modules/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
include { BLAST_BLASTN      } from '../../../../modules/blast/blastn/main.nf'      addParams( options: [:] )

workflow test_blast_blastn {
    input = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]

    BLAST_MAKEBLASTDB ( input )
    BLAST_BLASTN ( [ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db )
}