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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
13 lines
522 B
Text
13 lines
522 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BLAST_MAKEBLASTDB } from '../../../../modules/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
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include { BLAST_BLASTN } from '../../../../modules/blast/blastn/main.nf' addParams( options: [:] )
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workflow test_blast_blastn {
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input = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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BLAST_MAKEBLASTDB ( input )
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BLAST_BLASTN ( [ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db )
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}
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