nf-core_modules/software/bwa/index/meta.yml

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name: bwa_index
description: Create BWA index for reference genome
keywords:
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- index
- fasta
- genome
- reference
tools:
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- bwa:
description: |
BWA is a software package for mapping DNA sequences against
a large reference genome, such as the human genome.
homepage: http://bio-bwa.sourceforge.net/
documentation: http://www.htslib.org/doc/samtools.html
arxiv: arXiv:1303.3997
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params:
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- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
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- fasta:
type: file
description: Input genome fasta file
output:
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- index:
type: file
description: BWA genome index files
pattern: "*.{amb,ann,bwt,pac,sa}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
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- "@drpatelh"
- "@maxulysse"