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19 lines
572 B
Text
19 lines
572 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { RASUSA } from '../../../software/rasusa/main.nf' addParams( options: ['suffix':'_100X'])
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workflow test_rasusa {
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input = [ [ id:'test', single_end:false], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
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]
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]
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depth_cutoff = 100
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genome_size = "1000000b"
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RASUSA ( input, depth_cutoff, genome_size )
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}
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