mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
5a59e61052
* new module: rasusa * Removed blank line in software/rasusa/main * updated code as per reviewcomments * removed blank line as failed for lint * updated as per review comments * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
18 lines
572 B
Text
18 lines
572 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { RASUSA } from '../../../software/rasusa/main.nf' addParams( options: ['suffix':'_100X'])
|
|
|
|
workflow test_rasusa {
|
|
input = [ [ id:'test', single_end:false], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
|
|
]
|
|
]
|
|
|
|
depth_cutoff = 100
|
|
genome_size = "1000000b"
|
|
|
|
RASUSA ( input, depth_cutoff, genome_size )
|
|
}
|