nf-core_modules/tests/software/samtools/index/test.yml

- name: samtools index
  command: nextflow run tests/software/samtools/index -entry test_samtools_index -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/index
  files:
    - path: output/samtools/test_paired_end.sorted.bam.bai
      md5sum: 704c10dd1326482448ca3073fdebc2f4
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`- name: samtools index`
Update samtools modules with config logic (#381) * fixing paths for test * fixing paths for test * fixing pats to tests * fixing paths to tests * fixing paths to tests * fixing paths for tests * fixing paths for tests * fixing paths for tests * fixing paths fro tests * fixing paths for tests * indentation fixes * typo * renaming test results according to new file name * replacing the md5sums * fixing brackets * replacing md5sums * fixing md5sums * fixing md5sums' * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu> Co-authored-by: Ramon Rivera <riveravicens@gmail.com> 2021-03-24 18:15:30 +00:00			`command: nextflow run tests/software/samtools/index -entry test_samtools_index -c tests/config/nextflow.config`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- samtools/index`
Restructure tests to run individually for each module 2021-02-03 16:02:58 +00:00			`files:`
Update samtools modules with config logic (#381) * fixing paths for test * fixing paths for test * fixing pats to tests * fixing paths to tests * fixing paths to tests * fixing paths for tests * fixing paths for tests * fixing paths for tests * fixing paths fro tests * fixing paths for tests * indentation fixes * typo * renaming test results according to new file name * replacing the md5sums * fixing brackets * replacing md5sums * fixing md5sums * fixing md5sums' * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu> Co-authored-by: Ramon Rivera <riveravicens@gmail.com> 2021-03-24 18:15:30 +00:00			`- path: output/samtools/test_paired_end.sorted.bam.bai`
			`md5sum: 704c10dd1326482448ca3073fdebc2f4`