nf-core_modules/tests/software/samtools/index/test.yml at ca776e76a2441238a3904d9356c2d1c65df7ab2a - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-21 15:52:05 +00:00

Edmund Miller a3684d9594

Lint modules ci (#389 )

* ci: Add modules lint step

Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup

* ci: _ => /

* Update tests/config/pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-04-08 09:10:52 +01:00

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 - name: samtools index
   command: nextflow run tests/software/samtools/index -entry test_samtools_index -c tests/config/nextflow.config
   tags:
     - samtools
     - samtools/index
   files:
     - path: output/samtools/test_paired_end.sorted.bam.bai
       md5sum: 704c10dd1326482448ca3073fdebc2f4