mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
21 lines
810 B
Text
21 lines
810 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { DIAMOND_MAKEDB } from '../../../../modules/diamond/makedb/main.nf'
|
||
|
|
include { DIAMOND_BLASTX } from '../../../../modules/diamond/blastx/main.nf'
|
||
|
|
include { MEGAN_DAA2INFO } from '../../../../modules/megan/daa2info/main.nf'
|
||
|
|
|
||
|
|
workflow test_megan_daa2info {
|
||
|
|
|
||
|
|
db = [ file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['proteome_fasta'], checkIfExists: true) ]
|
||
|
|
fasta = [ file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['genome_fasta'], checkIfExists: true) ]
|
||
|
|
out_ext = 'daa'
|
||
|
|
blast_columns = []
|
||
|
|
megan_summary = true
|
||
|
|
|
||
|
|
DIAMOND_MAKEDB ( db )
|
||
|
|
DIAMOND_BLASTX ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db, out_ext, blast_columns )
|
||
|
|
MEGAN_DAA2INFO ( DIAMOND_BLASTX.out.daa, megan_summary )
|
||
|
|
}
|