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6702d2e145
* Add daa2info * Add right flag in the config * Fix config * Apply suggestions from code review Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
20 lines
810 B
Text
20 lines
810 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DIAMOND_MAKEDB } from '../../../../modules/diamond/makedb/main.nf'
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include { DIAMOND_BLASTX } from '../../../../modules/diamond/blastx/main.nf'
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include { MEGAN_DAA2INFO } from '../../../../modules/megan/daa2info/main.nf'
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workflow test_megan_daa2info {
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db = [ file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['proteome_fasta'], checkIfExists: true) ]
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fasta = [ file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['genome_fasta'], checkIfExists: true) ]
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out_ext = 'daa'
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blast_columns = []
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megan_summary = true
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DIAMOND_MAKEDB ( db )
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DIAMOND_BLASTX ( [ [id:'test'], fasta ], DIAMOND_MAKEDB.out.db, out_ext, blast_columns )
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MEGAN_DAA2INFO ( DIAMOND_BLASTX.out.daa, megan_summary )
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}
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