mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
42 lines
1.1 KiB
Text
42 lines
1.1 KiB
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { FASTK_FASTK as FASTK1 } from '../../../../modules/fastk/fastk/main.nf'
|
||
|
|
include { FASTK_FASTK as FASTK2 } from '../../../../modules/fastk/fastk/main.nf'
|
||
|
|
include { MERQURYFK_KATCOMP } from '../../../../modules/merquryfk/katcomp/main.nf'
|
||
|
|
|
||
|
|
workflow test_merquryfk_katcomp_png {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:true ], // meta map
|
||
|
|
file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
FASTK1 ( input )
|
||
|
|
FASTK2 ( input )
|
||
|
|
MERQURYFK_KATCOMP (
|
||
|
|
FASTK1.out.hist
|
||
|
|
.join( FASTK1.out.ktab )
|
||
|
|
.join( FASTK2.out.hist )
|
||
|
|
.join( FASTK2.out.ktab )
|
||
|
|
)
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_merquryfk_katcomp_pdf {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:true ], // meta map
|
||
|
|
file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
FASTK1 ( input )
|
||
|
|
FASTK2 ( input )
|
||
|
|
MERQURYFK_KATCOMP (
|
||
|
|
FASTK1.out.hist
|
||
|
|
.join( FASTK1.out.ktab )
|
||
|
|
.join( FASTK2.out.hist )
|
||
|
|
.join( FASTK2.out.ktab )
|
||
|
|
)
|
||
|
|
}
|